Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_01712Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. (129 aa)    
Predicted Functional Partners:
D920_00090
KEGG: bqy:MUS_2441 1.2e-06 rusA; putative crossover junction endodeoxyribonuclease.
       0.796
D920_01710
Transcriptional regulator, Cro/CI family.
       0.773
D920_01711
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.773
D920_01485
Phage transcriptional regulator, ArpU family.
       0.761
D920_01727
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.735
D920_01715
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.617
D920_01915
Modification methylase HhaI family protein; KEGG: ssk:SSUD12_0445 3.9e-134 cytosine-specific methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase.
       0.603
D920_00014
Site-specific recombinase, phage integrase family; KEGG: apb:SAR116_1016 7.9e-10 phage integrase; Psort location: Cytoplasmic, score: 7.50.
       0.593
D920_00054
Site-specific recombinase, phage integrase family; KEGG: apb:SAR116_1016 1.4e-12 phage integrase; Psort location: Cytoplasmic, score: 7.50.
       0.593
D920_00099
Helicase protein; KEGG: afm:AFUA_7G05530 7.9e-43 DEAD/DEAH box helicase K01529; Psort location: Cytoplasmic, score: 7.50.
       0.576
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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