Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01719Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (203 aa)    
Predicted Functional Partners:
D920_01715
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.999
D920_01722
KEGG: efa:EF0325 0. DNA polymerase; K02334 DNA polymerase bacteriophage-type; Psort location: Cytoplasmic, score: 7.50.
 
     0.997
D920_01724
Virulence-associated protein E; Psort location: Cytoplasmic, score: 7.50.
 
     0.994
D920_01725
VRR-NUC domain protein; KEGG: pha:PSHAa1996 0.0017 hypothetical protein; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 7.50.
 
     0.991
D920_01714
Hypothetical protein; KEGG: rpb:RPB_2316 0.0093 adk; adenylate kinase; K00939 adenylate kinase; Psort location: Cytoplasmic, score: 7.50.
       0.983
D920_01726
SNF2 domain protein; KEGG: bao:BAMF_3093 2.4e-143 SWI/SNF chromatin-remodeling complex subunit snf22; Psort location: Cytoplasmic, score: 7.50.
 
     0.974
D920_01717
Hypothetical protein.
       0.965
D920_01718
HNH endonuclease domain protein; KEGG: sds:SDEG_1118 5.6e-16 endodeoxyribonuclease.
       0.949
D920_01721
Hypothetical protein.
       0.931
D920_01818
Toxin secretion/phage lysis holin; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.917
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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