Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01727Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (174 aa)    
Predicted Functional Partners:
D920_01726
SNF2 domain protein; KEGG: bao:BAMF_3093 2.4e-143 SWI/SNF chromatin-remodeling complex subunit snf22; Psort location: Cytoplasmic, score: 7.50.
       0.979
D920_01725
VRR-NUC domain protein; KEGG: pha:PSHAa1996 0.0017 hypothetical protein; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 7.50.
       0.968
D920_01729
Terminase small subunit; Psort location: Cytoplasmic, score: 7.50.
 
     0.919
D920_01724
Virulence-associated protein E; Psort location: Cytoplasmic, score: 7.50.
 
     0.900
D920_00090
KEGG: bqy:MUS_2441 1.2e-06 rusA; putative crossover junction endodeoxyribonuclease.
       0.880
D920_01730
Phage terminase, large subunit, PBSX family; Psort location: Cytoplasmic, score: 7.50.
 
     0.860
D920_01854
Protein, SNF2 family; KEGG: lml:lmo4a_1704 8.1e-182 Snf2 family helicase; Psort location: CytoplasmicMembrane, score: 8.16.
       0.846
D920_01734
KEGG: pfa:PFL1925w 0.0037 cell division protein FtsH, putative K01417; Psort location: Cytoplasmic, score: 7.50.
 
     0.843
D920_00083
Putative phage portal protein, SPP1 Gp6; KEGG: ame:408348 0.0015 putative rRNA methyltransferase 3-like; K14857 AdoMet-dependent rRNA methyltransferase SPB1; Psort location: Cytoplasmic, score: 7.50.
       0.802
D920_01731
Phage portal protein, SPP1 family; KEGG: pfd:PFDG_01390 0.0096 hypothetical protein; K01876 aspartyl-tRNA synthetase.
       0.802
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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