Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01734KEGG: pfa:PFL1925w 0.0037 cell division protein FtsH, putative K01417; Psort location: Cytoplasmic, score: 7.50. (550 aa)    
Predicted Functional Partners:
D920_01729
Terminase small subunit; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.998
D920_01730
Phage terminase, large subunit, PBSX family; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.998
D920_01731
Phage portal protein, SPP1 family; KEGG: pfd:PFDG_01390 0.0096 hypothetical protein; K01876 aspartyl-tRNA synthetase.
 
    0.993
D920_00135
YD repeat protein; KEGG: phu:Phum_PHUM617500 0.0010 type II transmembrane protein, putative; Psort location: Cellwall, score: 9.20.
     
 0.989
D920_01737
Hypothetical protein; KEGG: edi:EDI_341030 2.6e-05 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 7.50.
 
     0.973
D920_00083
Putative phage portal protein, SPP1 Gp6; KEGG: ame:408348 0.0015 putative rRNA methyltransferase 3-like; K14857 AdoMet-dependent rRNA methyltransferase SPB1; Psort location: Cytoplasmic, score: 7.50.
 
    0.964
D920_01748
Tape measure domain protein; KEGG: spo:SPAPB1E7.04c 3.0e-18 chitinase (predicted) K01183.
 
   
 0.949
D920_00090
KEGG: bqy:MUS_2441 1.2e-06 rusA; putative crossover junction endodeoxyribonuclease.
 
     0.939
D920_00149
Hypothetical protein; KEGG: edi:EDI_048910 0.0071 intracellular protein transport protein USO1.
       0.932
D920_01738
Hypothetical protein.
       0.928
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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