Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01739Hypothetical protein; KEGG: hor:Hore_04160 0.0071 beta-1,3-glucanase. (102 aa)    
Predicted Functional Partners:
D920_01740
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
   0.979
D920_00135
YD repeat protein; KEGG: phu:Phum_PHUM617500 0.0010 type II transmembrane protein, putative; Psort location: Cellwall, score: 9.20.
  
  
 0.936
D920_01729
Terminase small subunit; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.933
D920_01730
Phage terminase, large subunit, PBSX family; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.932
D920_01737
Hypothetical protein; KEGG: edi:EDI_341030 2.6e-05 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 7.50.
  
    0.931
D920_01742
Phage protein, HK97 gp10 family.
       0.918
D920_01738
Hypothetical protein.
       0.890
D920_00217
Peptidase, M23 family; KEGG: efu:HMPREF0351_12843 1.6e-185 lysozyme; Psort location: CytoplasmicMembrane, score: 9.55.
  
  
 0.878
D920_01734
KEGG: pfa:PFL1925w 0.0037 cell division protein FtsH, putative K01417; Psort location: Cytoplasmic, score: 7.50.
  
    0.846
D920_02913
Carbohydrate binding domain protein; KEGG: lmy:LM5923_2862 3.0e-175 hypothetical protein; K01183 chitinase.
     
 0.841
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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