Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01767Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (243 aa)    
Predicted Functional Partners:
D920_00563
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.984
D920_02938
KEGG: vfi:VF_A1053 2.5e-09 MerR family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
     
 0.976
D920_01765
KEGG: efu:HMPREF0351_10433 2.1e-245 ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182; Psort location: Cytoplasmic, score: 7.50; Belongs to the UbiD family.
 
     0.964
D920_00341
Stage 0 sporulation protein J; KEGG: pub:SAR11_0354 5.8e-46 parB; chromosome partitioning protein K03497; Psort location: Cytoplasmic, score: 9.97; Belongs to the ParB family.
       0.960
D920_00413
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.950
D920_00565
Hypothetical protein; KEGG: ccv:CCV52592_1824 2.0e-07 phosphoglycerate kinase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.945
rsmG
16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.940
ubiX
Phenolic acid decarboxylase subunit B; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.936
D920_00223
Transcriptional regulator, MerR family; KEGG: llo:LLO_0515 4.0e-09 GTP cyclohydrolase; K06879 7-cyano-7-deazaguanine reductase; Psort location: Cytoplasmic, score: 7.50.
     
 0.935
D920_00224
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.935
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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