Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01770KEGG: efc:EFAU004_00424 0. ABC transporter ATP-binding protein/permease; Psort location: CytoplasmicMembrane, score: 10.00. (779 aa)    
Predicted Functional Partners:
D920_01771
Putative heme response regulator HssR; KEGG: bbp:BBPR_1604 1.4e-35 two-component response regulator K07776; Psort location: Cytoplasmic, score: 9.97.
     
 0.997
D920_01772
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: efc:EFAU004_00426 1.2e-114 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.997
D920_01788
Efflux ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c11620 3.4e-144 putative ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.994
D920_02143
Efflux ABC transporter, permease protein; KEGG: ljf:FI9785_1686 1.1e-49 ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.992
D920_00135
YD repeat protein; KEGG: phu:Phum_PHUM617500 0.0010 type II transmembrane protein, putative; Psort location: Cellwall, score: 9.20.
  
  
 0.991
D920_01579
Nitroreductase family protein; KEGG: efu:HMPREF0351_12619 1.3e-89 NADH dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.991
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.989
pheT
KEGG: efu:HMPREF0351_11283 0. pheT3; phenylalanine--tRNA ligase beta subunit K01890; Psort location: Cytoplasmic, score: 9.97; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.988
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
     
 0.988
D920_02067
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: efu:HMPREF0351_11400 1.7e-156 ciaH; sensor histidine kinase K14982; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.987
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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