Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01776Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (165 aa)    
Predicted Functional Partners:
D920_00915
SPFH/Band 7/PHB domain protein; KEGG: bbk:BARBAKC583_0924 1.5e-06 hflK; HflK protein; K04088 membrane protease subunit HflK; Psort location: CytoplasmicMembrane, score: 9.55.
       0.989
D920_01778
Hypothetical protein.
       0.856
D920_01780
Efflux ABC transporter, permease protein; KEGG: efu:HMPREF0351_10749 3.4e-18 ABC superfamily ATP binding cassette transporter, membrane protein K02004; Psort location: CytoplasmicMembrane, score: 10.00.
       0.814
D920_01777
Hypothetical protein.
       0.741
D920_01775
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.728
D920_01773
Transcriptional regulator, PadR family; KEGG: ase:ACPL_2208 7.5e-05 Coproporphyrinogen 3 oxidase, aerobic.
       0.701
D920_01774
Hypothetical protein; KEGG: psb:Psyr_2690 0.0012 glycosyl transferase family protein; K10012 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.701
D920_01907
Efflux ABC transporter, permease protein; KEGG: efu:HMPREF0351_10749 4.6e-22 ABC superfamily ATP binding cassette transporter, membrane protein K02004; Psort location: CytoplasmicMembrane, score: 10.00.
       0.689
D920_01779
ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_10446 1.7e-108 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
       0.682
D920_02786
Hypothetical protein.
       0.610
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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