Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_01788Efflux ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c11620 3.4e-144 putative ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00. (873 aa)    
Predicted Functional Partners:
D920_01787
KEGG: sgg:SGGBAA2069_c11630 5.7e-87 putative ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
 
 
 0.999
D920_01770
KEGG: efc:EFAU004_00424 0. ABC transporter ATP-binding protein/permease; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.994
D920_03002
KEGG: sgg:SGGBAA2069_c09990 5.0e-63 yclH; putative ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.99.
  
 
 0.989
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.976
pheT
KEGG: efu:HMPREF0351_11283 0. pheT3; phenylalanine--tRNA ligase beta subunit K01890; Psort location: Cytoplasmic, score: 9.97; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.973
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
  
  
 0.967
D920_01520
KEGG: efc:EFAU004_02618 2.5e-242 serine/threonine-protein kinase K08884; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.963
D920_00491
Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 7.5e-53 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.952
D920_00513
Hypothetical protein.
  
 
 0.952
D920_01403
ABC transporter, ATP-binding protein; KEGG: efi:OG1RF_12114 1.6e-91 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.952
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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