Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01801Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (109 aa)    
Predicted Functional Partners:
D920_01800
Transporter, major facilitator family protein; KEGG: ssr:SALIVB_1450 4.3e-09 coaE; Dephospho-CoA kinase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.996
D920_01803
Cyclic nucleotide-binding domain protein; KEGG: fma:FMG_1494 1.7e-06 pyruvate-formate-lyase-activating enzyme; K04069 pyruvate formate lyase activating enzyme; Psort location: Cytoplasmic, score: 7.50.
       0.942
D920_02663
Cyclic nucleotide-binding domain protein; KEGG: fma:FMG_1494 3.8e-10 pyruvate-formate-lyase-activating enzyme; K04069 pyruvate formate lyase activating enzyme; Psort location: Cytoplasmic, score: 7.50.
       0.868
D920_01802
Hypothetical protein.
       0.548
msrB
methionine-R-sulfoxide reductase; KEGG: efu:HMPREF0351_10140 2.5e-61 msrB; peptide-methionine (R)-S-oxide reductase K07305; Psort location: Cytoplasmic, score: 7.50.
       0.444
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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