Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_01828Hypothetical protein; KEGG: bvi:Bcep1808_4391 0.0062 triacylglycerol lipase K01046; Psort location: CytoplasmicMembrane, score: 9.87. (298 aa)    
Predicted Functional Partners:
nusG
Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.
  
    0.987
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
       0.981
D920_02873
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.974
D920_01827
KEGG: efc:EFAU004_02455 2.0e-162 L-lactate oxidase; Psort location: Cytoplasmic, score: 7.50.
       0.960
D920_01597
Putative PTS system, lactose-specific IIC component; KEGG: eat:EAT1b_1051 3.7e-202 PTS system lactose/cellobiose family transporter subunit IIC; K02787 PTS system, lactose-specific IIB component K02788; Psort location: CytoplasmicMembrane, score: 10.00.
       0.947
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
 
   
 0.945
D920_00957
KEGG: efu:HMPREF0351_10155 5.6e-80 Sir2 family transcriptional regulator K12410; Psort location: Cytoplasmic, score: 7.50.
       0.941
D920_02880
Zinc-binding alcohol dehydrogenase family protein; KEGG: efu:HMPREF0351_12637 8.1e-111 NADPH:quinone reductase related Zn-dependent oxidoreductase; Psort location: Cytoplasmic, score: 9.67; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
  
    0.926
D920_00419
KEGG: efc:EFAU004_02122 9.7e-163 L-lactate oxidase K10530; Psort location: Cytoplasmic, score: 7.50.
       0.918
ppaC
Inorganic diphosphatase PpaC; KEGG: efc:EFAU004_01167 6.2e-129 ppaC; manganese-dependent inorganic pyrophosphatase K15986; Psort location: Cytoplasmic, score: 9.97.
       0.912
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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