Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_01832CBS domain protein; Psort location: Cytoplasmic, score: 7.50. (221 aa)    
Predicted Functional Partners:
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.998
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
       0.995
rpmG
Ribosomal protein L33; KEGG: mmo:MMOB5490 0.00026 rpmG; 50S ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.995
nusG
Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.
       0.989
D920_02613
KEGG: efi:OG1RF_10412 2.1e-158 ABC superfamily ATP binding cassette transporter, membrane protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.980
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
     
 0.976
D920_02353
KEGG: llk:LLKF_2194 3.0e-10 yuiD; GNAT family acetyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.958
D920_00793
Pyruvate kinase; KEGG: efc:EFAU004_01291 6.6e-299 Pyruvate kinase K00873; Psort location: Cytoplasmic, score: 7.50.
     
 0.956
D920_02113
AMP-binding enzyme; KEGG: efu:HMPREF0351_11403 2.5e-203 acetate--CoA ligase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.956
dinG
DnaQ family exonuclease/DinG family helicase; 3'-5' exonuclease.
 
   
 0.951
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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