Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
D920_01868KEGG: efu:HMPREF0351_10354 5.8e-46 mdcD; malonate decarboxylase subunit delta K13931; Psort location: Cytoplasmic, score: 9.67. (99 aa)    
Predicted Functional Partners:
D920_01864
KEGG: efu:HMPREF0351_10358 6.9e-98 mdcB; triphosphoribosyl-dephospho-CoA synthase K13930; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.999
D920_01866
KEGG: efu:HMPREF0351_10356 1.1e-69 mdcG; malonate decarboxylase holo-[acyl-carrier-protein] synthase K13934; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.999
D920_01867
KEGG: efu:HMPREF0351_10355 1.0e-252 mdcE; malonate decarboxylase subunit gamma K13932; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.999
D920_01869
KEGG: efc:EFAU004_00346 6.3e-278 malonate decarboxylase subunit alpha; K13929 malonate decarboxylase alpha subunit; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.999
D920_01870
Malonate decarboxylase, epsilon subunit family protein; KEGG: efc:EFAU004_00345 1.6e-137 Malonyl CoA-acyl carrier protein transacylase; K13935 malonate decarboxylase epsilon subunit; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.999
D920_01865
Hypothetical protein; KEGG: ppo:PPM_2023 2.1e-18 vanT; serine/alanine racemase Vancomycin C-type resistance protein vanT; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.987
D920_01260
KEGG: efu:HMPREF0351_10971 2.7e-119 fabD2; [acyl-carrier-protein] S-malonyltransferase K00645; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.986
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
  
 0.970
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.932
D920_01257
acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
     
 0.930
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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