Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
D920_01875Hypothetical protein; KEGG: ssr:SALIVB_2089 4.3e-89 tyrosyl-tRNA synthetase; Psort location: CytoplasmicMembrane, score: 10.00. (291 aa)    
Predicted Functional Partners:
D920_01874
Acyltransferase; KEGG: efc:EFAU004_02493 9.6e-282 acyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.994
aspS
aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
     
 0.978
D920_00631
Putative transcriptional regulator; KEGG: vfi:VF_A0400 4.0e-09 lsrR; transcriptional repressor; Psort location: Cytoplasmic, score: 7.50.
       0.957
hisS
histidine--tRNA ligase; KEGG: efu:HMPREF0351_12435 3.8e-207 hisS; histidine--tRNA ligase K01892; Psort location: Cytoplasmic, score: 10.00.
       0.938
D920_00443
PTS system, lactose/cellobiose family IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
       0.931
D920_00632
KEGG: efc:EFAU004_02076 7.1e-167 glyceraldehyde-3-phosphate dehydrogenase K00134; Psort location: Cytoplasmic, score: 9.97.
       0.926
D920_02881
Hypothetical protein; KEGG: ssr:SALIVB_2089 3.4e-09 tyrosyl-tRNA synthetase; Psort location: CytoplasmicMembrane, score: 10.00.
 
    
0.922
nfo
Apurinic endonuclease; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
     
 0.915
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.911
D920_00486
Putative nrdI protein; KEGG: efu:HMPREF0351_10659 3.3e-59 nrdI; ribonucleotide reductase K03647; Belongs to the NrdI family.
       0.902
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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