Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01888Hypothetical protein; KEGG: lru:HMPREF0538_20378 1.0e-23 galactofuranosyltransferase; Psort location: Cytoplasmic, score: 7.50. (380 aa)    
Predicted Functional Partners:
D920_01885
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
 
 
 0.993
D920_01881
KEGG: suq:HMPREF0772_10540 8.5e-45 gtfB; accessory Sec system glycosyltransferase GtfB.
 
 
 
 0.990
D920_00043
Polysaccharide biosynthesis protein; KEGG: cco:CCC13826_0528 6.3e-09 cytosol aminopeptidase; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.968
D920_00582
NAD dependent epimerase/dehydratase family protein; KEGG: sud:ST398NM01_0168 4.4e-119 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.964
D920_01313
Methyltransferase domain protein; KEGG: efu:HMPREF0351_10904 4.1e-203 methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.944
D920_01883
KEGG: aur:HMPREF9243_0770 1.1e-85 gtfA; accessory Sec system glycosylation protein GtfA; Psort location: Cytoplasmic, score: 7.50.
 
     0.944
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.941
D920_00050
KEGG: smn:SMA_0861 5.6e-151 glf; UDP-galactopyranose mutase; K01854 UDP-galactopyranose mutase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.940
D920_01312
Glycosyltransferase, group 2 family protein; KEGG: efu:HMPREF0351_10905 0. family 2 glycosyl transferase; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.931
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.929
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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