Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01913Hypothetical protein. (53 aa)    
Predicted Functional Partners:
D920_01915
Modification methylase HhaI family protein; KEGG: ssk:SSUD12_0445 3.9e-134 cytosine-specific methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase.
       0.833
D920_00286
Hypothetical protein.
       0.788
D920_00287
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.742
D920_00288
Hypothetical protein; Psort location: Extracellular, score: 8.91.
       0.742
D920_00202
Addiction module antitoxin, RelB/DinJ family; Psort location: Cytoplasmic, score: 7.50.
       0.706
D920_00239
Cna protein B-type domain protein; Psort location: Cytoplasmic, score: 7.50.
       0.541
D920_00498
LPXTG-motif protein cell wall anchor domain protein; Psort location: Cellwall, score: 9.97.
       0.541
D920_01943
LPXTG-motif protein cell wall anchor domain protein; KEGG: mmx:MmarC6_0756 0.00061 cobN; cobaltochelatase subunit CobN K02230; Psort location: Cellwall, score: 8.71.
       0.541
D920_00099
Helicase protein; KEGG: afm:AFUA_7G05530 7.9e-43 DEAD/DEAH box helicase K01529; Psort location: Cytoplasmic, score: 7.50.
       0.517
D920_02007
HAD hydrolase, family IA, variant 3; KEGG: efc:EFAU004_01563 2.9e-60 phosphoglycolate phosphatase; Psort location: Cytoplasmic, score: 7.50.
       0.511
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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