Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01935DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50. (434 aa)    
Predicted Functional Partners:
D920_00510
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.993
D920_01947
Conjugal transfer family protein; Psort location: CytoplasmicMembrane, score: 8.16.
 
  
 0.992
D920_01124
Hypothetical protein; KEGG: edi:EDI_341030 0.00049 intracellular protein transport protein USO1.
 
  
 0.991
D920_00509
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
 
   
 0.988
D920_01931
FtsK/SpoIIIE family protein; KEGG: ppo:PPM_p0073 0.00021 topB; DNA topoisomerase III; Psort location: CytoplasmicMembrane, score: 9.96.
 
  
 0.988
D920_01120
Hypothetical protein.
 
   
 0.986
D920_00502
FtsK/SpoIIIE family protein; KEGG: ppo:PPM_p0073 3.1e-06 topB; DNA topoisomerase III; Psort location: CytoplasmicMembrane, score: 9.96.
 
  
 0.985
D920_01130
FtsK/SpoIIIE family protein; KEGG: ppo:PPM_p0073 7.9e-07 topB; DNA topoisomerase III; Psort location: CytoplasmicMembrane, score: 9.96.
 
  
 0.985
D920_01122
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
  
  
 0.979
D920_00024
Toxin-antitoxin system, toxin component, RelE family; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.978
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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