Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01939Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (122 aa)    
Predicted Functional Partners:
D920_01941
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.939
D920_01940
Hypothetical protein.
       0.773
D920_00503
Replication initiation factor; Psort location: Cytoplasmic, score: 7.50.
       0.634
D920_01942
Hypothetical protein; KEGG: bcg:BCG9842_B3013 6.5e-14 penicillin-binding protein 1A/1B K05366; Psort location: Extracellular, score: 9.72.
       0.634
D920_01937
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.598
D920_01127
DNA-binding helix-turn-helix protein; KEGG: fnu:FN0522 0.00098 exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 7.50.
       0.518
D920_01935
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50.
       0.518
D920_01943
LPXTG-motif protein cell wall anchor domain protein; KEGG: mmx:MmarC6_0756 0.00061 cobN; cobaltochelatase subunit CobN K02230; Psort location: Cellwall, score: 8.71.
       0.468
D920_01938
Hypothetical protein.
       0.452
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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