D920_01942 protein (Enterococcus faecalis 13SDW01)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

D920_01942

Hypothetical protein; KEGG: bcg:BCG9842_B3013 6.5e-14 penicillin-binding protein 1A/1B K05366; Psort location: Extracellular, score: 9.72. (468 aa)

Predicted Functional Partners:

D920_02631

0.684

D920_02588

0.679

D920_00401

0.654

D920_01941

0.651

D920_01939

0.634

D920_01940

0.634

ftsL

0.581

D920_01947

0.526

D920_01635

0.511

D920_01937

0.497

Your Current Organism:

Enterococcus faecalis 13SDW01

NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D920_00401	D920_01635	D920_00401	D920_01635	DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50.	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.627
D920_00401	D920_01942	D920_00401	D920_01942	DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: bcg:BCG9842_B3013 6.5e-14 penicillin-binding protein 1A/1B K05366; Psort location: Extracellular, score: 9.72.	0.654
D920_00401	D920_01947	D920_00401	D920_01947	DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50.	Conjugal transfer family protein; Psort location: CytoplasmicMembrane, score: 8.16.	0.681
D920_00401	D920_02588	D920_00401	D920_02588	DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.433
D920_00401	D920_02631	D920_00401	D920_02631	DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: cbj:H04402_02164 4.6e-09 multimodular transpeptidase-transglycosylase.	0.507
D920_01635	D920_00401	D920_01635	D920_00401	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50.	0.627
D920_01635	D920_01942	D920_01635	D920_01942	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; KEGG: bcg:BCG9842_B3013 6.5e-14 penicillin-binding protein 1A/1B K05366; Psort location: Extracellular, score: 9.72.	0.511
D920_01635	D920_02631	D920_01635	D920_02631	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; KEGG: cbj:H04402_02164 4.6e-09 multimodular transpeptidase-transglycosylase.	0.435
D920_01937	D920_01939	D920_01937	D920_01939	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.598
D920_01937	D920_01940	D920_01937	D920_01940	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein.	0.598
D920_01937	D920_01941	D920_01937	D920_01941	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.583
D920_01937	D920_01942	D920_01937	D920_01942	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: bcg:BCG9842_B3013 6.5e-14 penicillin-binding protein 1A/1B K05366; Psort location: Extracellular, score: 9.72.	0.497
D920_01939	D920_01937	D920_01939	D920_01937	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.598
D920_01939	D920_01940	D920_01939	D920_01940	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein.	0.773
D920_01939	D920_01941	D920_01939	D920_01941	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.939
D920_01939	D920_01942	D920_01939	D920_01942	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: bcg:BCG9842_B3013 6.5e-14 penicillin-binding protein 1A/1B K05366; Psort location: Extracellular, score: 9.72.	0.634
D920_01940	D920_01937	D920_01940	D920_01937	Hypothetical protein.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.598
D920_01940	D920_01939	D920_01940	D920_01939	Hypothetical protein.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.773
D920_01940	D920_01941	D920_01940	D920_01941	Hypothetical protein.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.752
D920_01940	D920_01942	D920_01940	D920_01942	Hypothetical protein.	Hypothetical protein; KEGG: bcg:BCG9842_B3013 6.5e-14 penicillin-binding protein 1A/1B K05366; Psort location: Extracellular, score: 9.72.	0.634