Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
D920_01956ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c14260 2.5e-139 glnH; amino acid ABC transporter amino acid-binding/permease K02029:K02030; Psort location: CytoplasmicMembrane, score: 10.00. (486 aa)    
Predicted Functional Partners:
D920_01955
KEGG: efu:HMPREF0351_11647 2.9e-115 glnQ2; glutamate ABC superfamily ATP binding cassette transporter, ABC protein; Psort location: CytoplasmicMembrane, score: 8.78.
 
 
 0.999
D920_00960
KEGG: efc:EFAU004_00191 1.7e-117 amino acid ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
 
 
 0.998
D920_02482
KEGG: efu:HMPREF0351_11285 3.7e-115 glnQ; glutamate ABC superfamily ATP binding cassette transporter, ABC protein K10041; Psort location: CytoplasmicMembrane, score: 9.96.
 
 
 0.998
D920_03062
Putative glutamine ABC transporter, ATP-binding protein GlnQ; KEGG: efu:HMPREF0351_12277 3.4e-89 amino acid ABC superfamily ATP binding cassette transporter, ABC protein; Psort location: CytoplasmicMembrane, score: 8.78.
 
 
 0.997
uvrA
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
     
 0.996
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
       0.994
D920_00959
ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c14260 1.1e-56 glnH; amino acid ABC transporter amino acid-binding/permease K02029:K02030; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
0.992
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.992
D920_00976
KEGG: efc:EFAU004_01514 1.6e-80 CAAX amino terminal protease family protein K07052; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.991
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.990
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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