Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02000Hypothetical protein. (202 aa)    
Predicted Functional Partners:
D920_02001
Hypothetical protein.
 
     0.936
D920_00071
Hypothetical protein.
 
     0.851
D920_02752
Hypothetical protein; KEGG: rpq:rpr22_CDS223 0.00068 ctp; Carboxyl-terminal protease K03797; Psort location: CytoplasmicMembrane, score: 9.87.
 
     0.844
D920_00078
Hypothetical protein.
 
     0.834
D920_00973
Hypothetical protein.
 
     0.819
D920_03148
KxYKxGKxW signal domain protein; KEGG: mpe:MYPE6470 6.8e-13 DNA topoisomerase IV subunit A; K02621 topoisomerase IV subunit A; Psort location: Cellwall, score: 9.20.
     
 0.812
D920_00837
Hypothetical protein; KEGG: mbu:Mbur_0710 0.0036 acetolactate synthase 3 catalytic subunit K01652.
 
     0.793
D920_02340
Hypothetical protein.
 
     0.766
D920_02843
Hypothetical protein.
 
     0.763
D920_02322
Hypothetical protein.
 
     0.759
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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