Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02030ABC-2 type transporter; KEGG: apb:SAR116_0895 5.8e-46 ABC protein; Psort location: CytoplasmicMembrane, score: 10.00. (256 aa)    
Predicted Functional Partners:
D920_02029
ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_12640 6.5e-141 ABC superfamily ATP binding cassette transporter, ABC protein K09687; Psort location: CytoplasmicMembrane, score: 8.78.
  
 0.999
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.976
D920_00323
KEGG: fal:FRAAL2549 2.1e-57 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.
 
  
 0.966
D920_01176
KEGG: fal:FRAAL2549 1.9e-56 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.99.
 
  
 0.965
D920_01183
KEGG: fal:FRAAL2549 9.3e-55 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.
 
  
 0.965
D920_01579
Nitroreductase family protein; KEGG: efu:HMPREF0351_12619 1.3e-89 NADH dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.963
D920_02101
Putative ABC transporter, ATP-binding protein SagG; KEGG: bao:BAMF_3184 4.9e-81 RBAM_030540; multidrug ABC transporter ATPase K09687; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
 0.951
D920_02366
KEGG: sgg:SGGBAA2069_c07940 5.8e-62 ABC transporter ATP-binding protein K01990; Psort location: CytoplasmicMembrane, score: 9.96.
  
  
 0.940
D920_00864
KEGG: rdn:HMPREF0733_11092 9.3e-55 ABC transporter ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.913
D920_02244
KEGG: llk:LLKF_0994 3.0e-97 yjjC; ABC transporter ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.
  
  
 0.913
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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