Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02059Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (89 aa)    
Predicted Functional Partners:
D920_02882
Hypothetical protein.
       0.939
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.797
D920_01490
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.779
D920_00980
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.767
D920_01265
GIY-YIG catalytic domain protein; KEGG: efc:EFAU004_01326 5.8e-117 excinuclease ABC; Psort location: Cytoplasmic, score: 9.67.
       0.716
D920_03125
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.709
D920_01761
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.563
D920_00528
KEGG: efc:EFAU004_00655 2.5e-84 exonuclease, DNA polymerase III, epsilon subunit family protein K02342; Psort location: Cytoplasmic, score: 9.97.
       0.515
D920_00978
Hypothetical protein; KEGG: efu:HMPREF0351_12771 3.9e-15 DNA-directed DNA polymerase K03502.
       0.515
D920_00979
ImpB/MucB/SamB family protein; KEGG: efc:EFAU004_00480 1.6e-167 DNA directed DNA polymerase K03502; Psort location: Cytoplasmic, score: 7.50; Belongs to the DNA polymerase type-Y family.
       0.515
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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