Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02071Hypothetical protein; KEGG: scm:SCHCODRAFT_255708 0.0061 hypothetical protein; K11131 H/ACA ribonucleoprotein complex subunit 4. (93 aa)    
Predicted Functional Partners:
D920_00495
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.991
D920_02284
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.985
D920_03122
Glutathione peroxidase; KEGG: efu:HMPREF0351_10469 2.9e-60 gpxA; glutathione peroxidase K00432; Belongs to the glutathione peroxidase family.
       0.801
D920_02070
Oxidoreductase, NAD-binding domain protein; KEGG: efc:EFAU004_00935 9.5e-156 oxidoreductase family, NAD-binding Rossmann fold protein; Psort location: Cytoplasmic, score: 7.50.
       0.751
ldh-2
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
       0.678
D920_02069
Transcriptional regulator, RpiR family; KEGG: ppo:PPM_2480 1.7e-53 rpiR3; glk-like protein; Psort location: Cytoplasmic, score: 7.50.
       0.675
D920_02827
KEGG: efl:EF62_1688 2.5e-157 oxidoreductase, yhhX-like protein; Psort location: Cytoplasmic, score: 7.50.
       0.503
D920_02376
PTS system, Lactose/Cellobiose specific IIB subunit; KEGG: efu:HMPREF0351_11384 8.0e-33 PTS family lactose/cellobiose porter, enzyme I K02822; Psort location: Cytoplasmic, score: 7.50.
       0.455
D920_02068
KEGG: rha:RHA1_ro04741 4.3e-34 phoP; response regulator, two-component system K02483; Psort location: Cytoplasmic, score: 9.97.
       0.419
D920_02067
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: efu:HMPREF0351_11400 1.7e-156 ciaH; sensor histidine kinase K14982; Psort location: CytoplasmicMembrane, score: 10.00.
       0.406
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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