Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02080DNA topoisomerase; KEGG: efu:HMPREF0351_11373 4.5e-284 topA2; DNA topoisomerase TopA K03169; Psort location: Cytoplasmic, score: 9.97. (724 aa)    
Predicted Functional Partners:
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.989
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
  
   0.983
D920_01855
Exonuclease SbcCD, C subunit; KEGG: efu:HMPREF0351_12427 2.8e-259 sbcC; exodeoxyribonuclease SbcC K03546; Psort location: Cytoplasmic, score: 9.97.
 
 0.975
D920_00104
Hypothetical protein; KEGG: edi:EDI_048910 9.6e-09 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 7.50.
  
 0.972
D920_01522
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.970
dinG
DnaQ family exonuclease/DinG family helicase; 3'-5' exonuclease.
  
 0.970
D920_02809
ATP-dependent DNA helicase, RecQ family; KEGG: efu:HMPREF0351_11105 4.5e-165 recQ; ATP-dependent helicase RecQ K03654; Psort location: Cytoplasmic, score: 9.97.
 
 0.967
D920_01410
KEGG: efc:EFAU004_00715 1.5e-127 DNA polymerase III subunit delta' K02341; Psort location: Cytoplasmic, score: 9.97.
  
 0.965
D920_02545
KEGG: efu:HMPREF0351_11232 3.4e-238 recQ2; ATP-dependent helicase RecQ K03654; Psort location: Cytoplasmic, score: 9.97.
  
 0.960
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.956
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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