Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02100ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00. (364 aa)    
Predicted Functional Partners:
D920_02099
ABC-2 type transporter; KEGG: bra:BRADO7121 8.2e-05 ABC transporter permease ATP-binding protein K13926; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.999
D920_02101
Putative ABC transporter, ATP-binding protein SagG; KEGG: bao:BAMF_3184 4.9e-81 RBAM_030540; multidrug ABC transporter ATPase K09687; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
 0.992
D920_02102
Histidine kinase; KEGG: bao:BAMF_3183 1.4e-51 RBAM_030530; sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.977
D920_00609
ABC transporter, ATP-binding protein; KEGG: lbh:Lbuc_2261 1.9e-88 Fe(3+)-transporting ATPase; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.960
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
     
 0.951
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.942
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
       0.932
D920_02029
ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_12640 6.5e-141 ABC superfamily ATP binding cassette transporter, ABC protein K09687; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
 0.929
D920_02103
Response regulator receiver domain protein; KEGG: ava:Ava_2028 3.7e-35 two component LuxR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97.
 
     0.928
D920_02366
KEGG: sgg:SGGBAA2069_c07940 5.8e-62 ABC transporter ATP-binding protein K01990; Psort location: CytoplasmicMembrane, score: 9.96.
 
  
 0.928
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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