Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
D920_02103Response regulator receiver domain protein; KEGG: ava:Ava_2028 3.7e-35 two component LuxR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97. (208 aa)    
Predicted Functional Partners:
D920_02102
Histidine kinase; KEGG: bao:BAMF_3183 1.4e-51 RBAM_030530; sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.999
D920_01296
Putative sensor protein VraS; KEGG: efc:EFAU004_01356 2.3e-154 sensor histidine kinase K11617; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.997
D920_01520
KEGG: efc:EFAU004_02618 2.5e-242 serine/threonine-protein kinase K08884; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.991
D920_01522
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.989
D920_02099
ABC-2 type transporter; KEGG: bra:BRADO7121 8.2e-05 ABC transporter permease ATP-binding protein K13926; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.982
D920_02719
Amino acid permease; KEGG: sgg:SGGBAA2069_c08160 0.00062 basic amino acid/polyamine antiporter K03294; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.971
D920_01297
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.968
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.963
D920_02237
Hypothetical protein; KEGG: nth:Nther_2685 1.7e-23 monosaccharide-transporting ATPase K10439.
  
  
 0.957
D920_03091
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: efc:EFAU004_00525 2.5e-141 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.952
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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