Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_02106Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (91 aa)    
Predicted Functional Partners:
D920_01919
DNA-binding helix-turn-helix protein; KEGG: med:MELS_1071 3.7e-12 lexA repressor family protein; K01356 repressor LexA; Psort location: Cytoplasmic, score: 7.50.
       0.937
D920_01819
DNA-binding helix-turn-helix protein; KEGG: asm:MOUSESFB_0090 0.00015 XRE family transcriptional regulator; K01356 repressor LexA.
       0.799
D920_02044
DNA-binding helix-turn-helix protein; KEGG: clj:CLJU_c36670 7.4e-10 transcriptional regulator; K01356 repressor LexA.
       0.799
D920_02045
DNA-binding helix-turn-helix protein; KEGG: sgg:SGGBAA2069_c10720 0.0057 transcriptional regulator.
       0.644
D920_01169
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.461
D920_02104
Hypothetical protein.
       0.459
D920_02686
Isochorismatase family protein; KEGG: efu:HMPREF0351_11492 5.8e-46 isochorismatase; Psort location: Cytoplasmic, score: 7.50.
       0.424
D920_00667
Cof-like hydrolase; KEGG: efc:EFAU004_01483 5.1e-70 HAD superfamily hydrolase; Psort location: Cytoplasmic, score: 7.50.
       0.410
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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