Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02142KEGG: efu:HMPREF0351_12109 2.7e-23 TetR/AcrR family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50. (211 aa)    
Predicted Functional Partners:
D920_02143
Efflux ABC transporter, permease protein; KEGG: ljf:FI9785_1686 1.1e-49 ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.999
D920_02144
ABC transporter, ATP-binding protein; KEGG: efi:OG1RF_10527 8.4e-93 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
   
 
 0.994
D920_00826
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.992
D920_01698
Putative transcriptional regulator CtsR; Psort location: Cytoplasmic, score: 7.50; Belongs to the CtsR family.
     
 0.946
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.936
glyQ
KEGG: efu:HMPREF0351_11973 3.6e-163 glyQ; glycine--tRNA ligase alpha subunit K01878; Psort location: Cytoplasmic, score: 9.97.
  
    0.927
glyS
KEGG: efu:HMPREF0351_11972 0. glyS; glycine--tRNA ligase beta subunit K01879; Psort location: Cytoplasmic, score: 9.97.
       0.924
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
 0.899
D920_00918
Phage infection protein; KEGG: edi:EDI_048910 2.3e-14 intracellular protein transport protein USO1; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.881
D920_01770
KEGG: efc:EFAU004_00424 0. ABC transporter ATP-binding protein/permease; Psort location: CytoplasmicMembrane, score: 10.00.
   
 
 0.881
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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