Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_02146KEGG: efu:HMPREF0351_12533 1.5e-164 radical SAM superfamily protein K07139; Psort location: Cytoplasmic, score: 7.50. (326 aa)    
Predicted Functional Partners:
D920_02145
Putative rRNA methylase; KEGG: mpx:MPD5_0388 1.6e-57 MraW methylase family SAM-dependent methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
     0.997
D920_02147
PAP2 family protein; KEGG: efu:HMPREF0351_12532 1.5e-61 type 2 phosphatidic acid phosphatase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.989
D920_02076
Rhodanese-like protein; KEGG: bqy:MUS_2751 3.3e-11 yqhL; putative rhodanese domain sulfurtransferase.
  
  
 0.982
D920_01522
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
    0.979
D920_02148
Muramidase-2; KEGG: efc:EFAU004_02584 5.0e-269 N-acetylmuramoyl-L-alanine amidase; Psort location: Extracellular, score: 9.98.
       0.978
D920_02244
KEGG: llk:LLKF_0994 3.0e-97 yjjC; ABC transporter ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.
  
  
 0.970
D920_02804
Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
       0.967
D920_02831
Putative Na+/H+ antiporter; KEGG: tgo:TGME49_105180 2.4e-17 sodium/hydrogen exchanger, putative; Psort location: CytoplasmicMembrane, score: 10.00.
       0.967
D920_01326
YihY family protein; KEGG: efu:HMPREF0351_10890 3.1e-118 rbn; ribonuclease BN K07058; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the UPF0761 family.
       0.960
D920_01641
KEGG: efu:HMPREF0351_12652 6.0e-44 A24A family peptidase; K02236 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.960
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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