Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02162KEGG: ppo:PPM_0553 7.3e-39 araC7; chemotaxis response regulator protein-glutamate methylesterase 3 K07720; Psort location: Cytoplasmic, score: 9.97. (479 aa)    
Predicted Functional Partners:
D920_02159
ABC transporter, solute-binding protein; KEGG: snc:HMPREF0837_10106 2.4e-05 maltose/maltodextrin ABC transporter ATP-binding protein K10108.
 
   
 0.999
D920_02160
Hypothetical protein; KEGG: dru:Desru_1808 0.0060 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; K00330 NADH-quinone oxidoreductase subunit A; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.999
D920_02161
HAMP domain protein; KEGG: efc:EFAU004_02561 3.4e-215 sensor histidine kinase K07718; Psort location: CytoplasmicMembrane, score: 9.96.
 
  
 0.999
D920_02157
ABC transporter, permease protein; KEGG: rcu:RCOM_1803670 2.8e-20 L-arabinose transport system permease protein araP, putative; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.998
D920_02158
Putative protein LplC; KEGG: bcv:Bcav_3574 5.2e-29 monosaccharide-transporting ATPase K10190; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.998
D920_02970
HAMP domain protein; KEGG: efu:HMPREF0351_11586 5.7e-87 sensor histidine kinase; K07718 two-component system, sensor histidine kinase YesM; Psort location: CytoplasmicMembrane, score: 9.81.
 
  
 0.984
D920_02166
KEGG: efc:EFAU004_02556 0. glycosyl hydrolase family 38 protein; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.979
cinA
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.5e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.
       0.974
D920_02181
ABC transporter, permease protein; KEGG: ppy:PPE_00791 2.6e-27 L-arabinose transporter permease araP K10189; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.961
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.957
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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