Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02181ABC transporter, permease protein; KEGG: ppy:PPE_00791 2.6e-27 L-arabinose transporter permease araP K10189; Psort location: CytoplasmicMembrane, score: 10.00. (323 aa)    
Predicted Functional Partners:
D920_02179
ABC transporter, solute-binding protein; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.997
D920_02158
Putative protein LplC; KEGG: bcv:Bcav_3574 5.2e-29 monosaccharide-transporting ATPase K10190; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.989
D920_02180
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.986
D920_02182
Protein LplC; KEGG: bsr:I33_2929 1.5e-29 L-arabinose transport system permease protein AraQ K10190; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.983
D920_02159
ABC transporter, solute-binding protein; KEGG: snc:HMPREF0837_10106 2.4e-05 maltose/maltodextrin ABC transporter ATP-binding protein K10108.
 
  
 0.978
D920_02578
ABC transporter, permease protein; KEGG: bcv:Bcav_3574 6.8e-43 monosaccharide-transporting ATPase K10190; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.962
D920_02162
KEGG: ppo:PPM_0553 7.3e-39 araC7; chemotaxis response regulator protein-glutamate methylesterase 3 K07720; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.961
D920_02166
KEGG: efc:EFAU004_02556 0. glycosyl hydrolase family 38 protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.958
D920_02974
ABC transporter, permease protein; KEGG: dth:DICTH_0382 1.4e-44 L-arabinose transport system permease AraQ; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.956
D920_03029
ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_12250 1.9e-180 msmK; maltose ABC superfamily ATP binding cassette transporter, ABC protein K10112; Psort location: CytoplasmicMembrane, score: 9.96.
 
   
 0.952
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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