Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02205Hypothetical protein; KEGG: ctp:CTRG_05827 1.2e-09 hypothetical protein; K01183 chitinase; Psort location: Cellwall, score: 9.21. (160 aa)    
Predicted Functional Partners:
D920_02204
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.997
D920_02203
Signal peptidase I; KEGG: efu:HMPREF0351_12299 1.8e-83 sipA; Sec family Type I general secretory pathway S26 family signal peptidase K03100; Psort location: Cellwall, score: 8.76.
       0.931
D920_01573
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.787
D920_02942
Fibronectin-binding protein; Psort location: Cytoplasmic, score: 7.50.
       0.746
rpmG-2
Ribosomal protein L33; KEGG: mmo:MMOB5490 3.9e-08 rpmG; 50S ribosomal protein L33 K02913; Belongs to the bacterial ribosomal protein bL33 family.
       0.703
D920_02847
Signal peptidase I; KEGG: efc:EFAU004_01186 6.3e-72 signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 8.28; Belongs to the peptidase S26 family.
       0.585
rpsN
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
       0.578
rpmG
Ribosomal protein L33; KEGG: mmo:MMOB5490 0.00026 rpmG; 50S ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL33 family.
       0.568
D920_03122
Glutathione peroxidase; KEGG: efu:HMPREF0351_10469 2.9e-60 gpxA; glutathione peroxidase K00432; Belongs to the glutathione peroxidase family.
       0.524
D920_02688
Penicillin-binding protein, transpeptidase domain protein; KEGG: efu:HMPREF0351_10994 0. pbp2B; penicillin-binding protein K00687; Psort location: CytoplasmicMembrane, score: 9.51.
       0.447
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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