Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02216Hypothetical protein; KEGG: sha:SH0994 2.1e-20 agrC; AgrC protein; K07706 two-component system, AgrA family, sensor histidine kinase AgrC; Psort location: CytoplasmicMembrane, score: 10.00. (432 aa)    
Predicted Functional Partners:
D920_02217
LytTr DNA-binding domain protein; KEGG: sgg:SGGBAA2069_c19630 1.9e-15 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.67.
 
   
 0.991
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
     
 0.970
D920_02761
LytTr DNA-binding domain protein; KEGG: sgg:SGGBAA2069_c19630 6.3e-17 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.969
D920_01792
Putative accessory protein regulator protein A; KEGG: sgg:SGGBAA2069_c19630 1.7e-23 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.968
D920_00251
Response regulator receiver domain protein; KEGG: sgg:SGGBAA2069_c19630 5.1e-15 fasA1; response regulator; Psort location: CytoplasmicMembrane, score: 8.16.
 
   
 0.967
D920_01810
KEGG: sgg:SGGBAA2069_c05640 1.7e-07 fasA; Chemotaxis response regulator protein K07707; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.959
D920_00630
KEGG: ehr:EHR_08380 1.2e-171 RNA polymerase factor sigma-54; Psort location: CytoplasmicMembrane, score: 8.16.
     
 0.956
D920_01295
Response regulator protein VraR; KEGG: npu:Npun_R2420 5.4e-43 LuxR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.942
D920_02103
Response regulator receiver domain protein; KEGG: ava:Ava_2028 3.7e-35 two component LuxR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.942
D920_00901
KEGG: efu:HMPREF0351_10204 0. aad; aldehyde-alcohol dehydrogenase K04072; Psort location: Cytoplasmic, score: 9.97; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.938
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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