Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02325Hypothetical protein. (205 aa)    
Predicted Functional Partners:
D920_02327
Hypothetical protein.
       0.977
D920_02326
Hypothetical protein.
       0.932
D920_02328
Leucine Rich repeat-containing domain protein; KEGG: tva:TVAG_387410 4.6e-06 viral A-type inclusion protein; K02331 DNA polymerase phi subunit; Psort location: CytoplasmicMembrane, score: 9.93.
       0.932
D920_01673
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.870
D920_00900
Leucine Rich repeat-containing domain protein; KEGG: ctc:CTC00520 2.7e-09 cwp66 homolog/N-acetylmuramoyl-L-alanine amidase K01446.
       0.695
D920_02324
Hypothetical protein.
       0.548
D920_02329
Hypothetical protein.
       0.538
D920_00725
M protein trans-acting positive regulator; KEGG: csh:Closa_3636 0.00045 transcriptional antiterminator BglG K03491; Psort location: Cytoplasmic, score: 7.50.
       0.521
D920_02610
M protein trans-acting positive regulator; KEGG: csh:Closa_1510 3.4e-07 transcriptional antiterminator BglG; Psort location: Cytoplasmic, score: 7.50.
       0.521
D920_02364
Flavin reductase; KEGG: ssa:SSA_0903 2.5e-20 NAD(P)H dehydrogenase (quinone); Psort location: Cytoplasmic, score: 7.50.
       0.493
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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