Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02369Hypothetical protein. (40 aa)    
Predicted Functional Partners:
D920_02370
Methyltransferase domain protein; KEGG: ckl:CKL_2616 2.2e-85 methyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.727
D920_02368
Transcriptional activator, Rgg/GadR/MutR family domain protein; Psort location: Cytoplasmic, score: 7.50.
       0.592
D920_02371
Hypothetical protein; KEGG: ppo:PPM_1316 1.0e-23 bI1; putative intron-encoded endonuclease.
       0.571
D920_02372
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.560
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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