Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02392Hypothetical protein. (44 aa)    
Predicted Functional Partners:
D920_02393
ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_11368 1.9e-111 ABC superfamily ATP binding cassette transporter, ABC protein K05833; Psort location: CytoplasmicMembrane, score: 8.78.
       0.412
D920_02394
Branched-chain amino acid ABC transporter, permease protein; KEGG: nth:Nther_2686 8.9e-18 monosaccharide-transporting ATPase K10440; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
       0.412
D920_02395
ABC transporter substrate binding protein; KEGG: bwe:BcerKBAB4_4118 0.0028 5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase; Psort location: CytoplasmicMembrane, score: 9.55.
       0.412
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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