Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02417Cof-like hydrolase; KEGG: ctu:CTU_14460 1.1e-56 ybjI; phosphatase ybjI K07024. (272 aa)    
Predicted Functional Partners:
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
  
    0.981
D920_00752
Cof-like hydrolase; KEGG: efc:EFAU004_01795 1.6e-114 HAD superfamily hydrolase K07024; Psort location: Cytoplasmic, score: 7.50.
 
  
0.976
rpmI
Ribosomal protein L35; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL35 family.
  
    0.948
D920_00062
Hypothetical protein; KEGG: dda:Dd703_0763 1.9e-10 PTS system beta-glucoside-specific transporter subunit IIABC; K02755 PTS system, beta-glucosides-specific IIA component; K02756 PTS system, beta-glucosides-specific IIB component K02757; Psort location: CytoplasmicMembrane, score: 9.55.
     
 0.935
D920_00484
KEGG: efu:HMPREF0351_10658 2.2e-291 PTS family sucrose porter component IIABC; K02809 PTS system, sucrose-specific IIB component K02810; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.935
D920_00712
KEGG: efu:HMPREF0351_11993 9.2e-261 bglP2; PTS family glucose/glucoside (glc) porter component IIABC; K02755 PTS system, beta-glucosides-specific IIA component; K02756 PTS system, beta-glucosides-specific IIB component K02757; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.935
D920_01608
KEGG: lpl:lp_0185 1.3e-174 pts1BCA; PTS system, oligosucrose-specific EIIBCA component; K02808 PTS system, sucrose-specific IIA component; K02809 PTS system, sucrose-specific IIB component K02810; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.935
D920_02256
KEGG: efi:OG1RF_11231 1.0e-270 ptsG; PTS family glucose porter, IICBA component; K02802 PTS system, N-acetylglucosamine-specific IIA component; K02803 PTS system, N-acetylglucosamine-specific IIB component K02804; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.935
D920_02273
KEGG: efc:EFAU004_00409 0. PTS system glucose-specific transporter subunit IIABC; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.935
D920_00120
KEGG: esi:Exig_1578 2.4e-79 IS605 family transposase OrfB K07496; Psort location: Cytoplasmic, score: 7.50.
 
     0.920
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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