Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_02513Hypothetical protein. (84 aa)    
Predicted Functional Partners:
D920_01520
KEGG: efc:EFAU004_02618 2.5e-242 serine/threonine-protein kinase K08884; Psort location: CytoplasmicMembrane, score: 8.78.
       0.504
D920_02514
Hypothetical protein; KEGG: mpf:MPUT_0462 2.3e-23 RecD/TraA family helicase K03581.
       0.498
D920_02512
Hypothetical protein; KEGG: bqy:MUS_1155 9.5e-14 yitW; serine O-acetyltransferase.
       0.440
D920_01797
UvrD/REP helicase; KEGG: efc:EFAU004_00457 5.8e-259 pcrA; ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
       0.422
D920_01989
KEGG: efu:HMPREF0351_11609 0. pcrA; ATP-dependent DNA helicase PcrA K03657; Psort location: Cytoplasmic, score: 9.67.
       0.422
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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