Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02548Hypothetical protein; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0223 family. (91 aa)    
Predicted Functional Partners:
D920_02547
Inositol monophosphatase family protein; KEGG: efu:HMPREF0351_11230 5.7e-87 suhB; inositol-phosphate phosphatase K01092; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.999
D920_02546
GTP-binding protein TypA; KEGG: efu:HMPREF0351_11231 0. tufA3; elongation factor EF1A K06207; Psort location: CytoplasmicMembrane, score: 8.78.
       0.995
D920_02941
Chloride transporter, ClC family; KEGG: cpr:CPR_1400 4.8e-19 chloride channel protein K01529; Psort location: CytoplasmicMembrane, score: 10.00.
       0.991
D920_02550
Dihydrolipoyl dehydrogenase; KEGG: efu:HMPREF0351_11228 3.6e-227 lpdA; dihydrolipoyl dehydrogenase K00382; Psort location: Cytoplasmic, score: 9.97.
       0.979
D920_02551
KEGG: efi:OG1RF_11143 4.3e-231 aceF; pyruvate dehydrogenase complex E2, dihydrolipoamide acetyltransferase K00627; Psort location: Cytoplasmic, score: 9.67.
       0.979
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
     
 0.979
D920_02539
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.974
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
 
     0.973
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.970
D920_02538
KEGG: efc:EFAU004_01080 7.2e-71 RsmD family RNA methyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.970
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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