D920_02628 protein (Enterococcus faecalis 13SDW01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

D920_02628

ABC transporter, solute-binding protein; KEGG: snc:HMPREF0837_10106 1.1e-33 maltose/maltodextrin ABC transporter ATP-binding protein K10108. (431 aa)

Predicted Functional Partners:

D920_02627

0.999

D920_02629

0.999

D920_02630

0.999

D920_03029

0.999

D920_00424

0.990

D920_00598

0.990

D920_01653

0.990

D920_02579

0.990

D920_02973

0.990

D920_02625

0.976

Your Current Organism:

Enterococcus faecalis 13SDW01

NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
D920_00424	D920_02625	Putative transmembrane permease MsmF; KEGG: apb:SAR116_1511 1.2e-38 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: efa:EF1348 1.4e-216 glucan 1,6-alpha-glucosidase; K01215 glucan 1,6-alpha-glucosidase; Psort location: Cytoplasmic, score: 9.97.	0.873
D920_00424	D920_02627	Putative transmembrane permease MsmF; KEGG: apb:SAR116_1511 1.2e-38 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00.	Intracellular maltogenic amylase; KEGG: efl:EF62_1799 6.8e-233 dexC; neopullulanase; Psort location: Cytoplasmic, score: 9.97.	0.913
D920_00424	D920_02628	Putative transmembrane permease MsmF; KEGG: apb:SAR116_1511 1.2e-38 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, solute-binding protein; KEGG: snc:HMPREF0837_10106 1.1e-33 maltose/maltodextrin ABC transporter ATP-binding protein K10108.	0.990
D920_00424	D920_02630	Putative transmembrane permease MsmF; KEGG: apb:SAR116_1511 1.2e-38 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: llk:LLKF_1844 3.9e-72 malG; maltose ABC transporter permease K10110; Psort location: CytoplasmicMembrane, score: 10.00.	0.997
D920_00424	D920_03029	Putative transmembrane permease MsmF; KEGG: apb:SAR116_1511 1.2e-38 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_12250 1.9e-180 msmK; maltose ABC superfamily ATP binding cassette transporter, ABC protein K10112; Psort location: CytoplasmicMembrane, score: 9.96.	0.997
D920_00598	D920_02625	ABC transporter, permease protein; KEGG: bst:GYO_3124 1.1e-35 L-arabinose transport system permease AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: efa:EF1348 1.4e-216 glucan 1,6-alpha-glucosidase; K01215 glucan 1,6-alpha-glucosidase; Psort location: Cytoplasmic, score: 9.97.	0.873
D920_00598	D920_02627	ABC transporter, permease protein; KEGG: bst:GYO_3124 1.1e-35 L-arabinose transport system permease AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	Intracellular maltogenic amylase; KEGG: efl:EF62_1799 6.8e-233 dexC; neopullulanase; Psort location: Cytoplasmic, score: 9.97.	0.913
D920_00598	D920_02628	ABC transporter, permease protein; KEGG: bst:GYO_3124 1.1e-35 L-arabinose transport system permease AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, solute-binding protein; KEGG: snc:HMPREF0837_10106 1.1e-33 maltose/maltodextrin ABC transporter ATP-binding protein K10108.	0.990
D920_00598	D920_02630	ABC transporter, permease protein; KEGG: bst:GYO_3124 1.1e-35 L-arabinose transport system permease AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: llk:LLKF_1844 3.9e-72 malG; maltose ABC transporter permease K10110; Psort location: CytoplasmicMembrane, score: 10.00.	0.993
D920_00598	D920_03029	ABC transporter, permease protein; KEGG: bst:GYO_3124 1.1e-35 L-arabinose transport system permease AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_12250 1.9e-180 msmK; maltose ABC superfamily ATP binding cassette transporter, ABC protein K10112; Psort location: CytoplasmicMembrane, score: 9.96.	0.997
D920_01653	D920_02625	ABC transporter, permease protein; KEGG: bsr:I33_2930 4.0e-31 L-arabinose transport system permease protein AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: efa:EF1348 1.4e-216 glucan 1,6-alpha-glucosidase; K01215 glucan 1,6-alpha-glucosidase; Psort location: Cytoplasmic, score: 9.97.	0.873
D920_01653	D920_02627	ABC transporter, permease protein; KEGG: bsr:I33_2930 4.0e-31 L-arabinose transport system permease protein AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	Intracellular maltogenic amylase; KEGG: efl:EF62_1799 6.8e-233 dexC; neopullulanase; Psort location: Cytoplasmic, score: 9.97.	0.913
D920_01653	D920_02628	ABC transporter, permease protein; KEGG: bsr:I33_2930 4.0e-31 L-arabinose transport system permease protein AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, solute-binding protein; KEGG: snc:HMPREF0837_10106 1.1e-33 maltose/maltodextrin ABC transporter ATP-binding protein K10108.	0.990
D920_01653	D920_02630	ABC transporter, permease protein; KEGG: bsr:I33_2930 4.0e-31 L-arabinose transport system permease protein AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: llk:LLKF_1844 3.9e-72 malG; maltose ABC transporter permease K10110; Psort location: CytoplasmicMembrane, score: 10.00.	0.997
D920_01653	D920_03029	ABC transporter, permease protein; KEGG: bsr:I33_2930 4.0e-31 L-arabinose transport system permease protein AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_12250 1.9e-180 msmK; maltose ABC superfamily ATP binding cassette transporter, ABC protein K10112; Psort location: CytoplasmicMembrane, score: 9.96.	0.997
D920_02579	D920_02625	ABC transporter, permease protein; KEGG: bsr:I33_2930 2.1e-34 L-arabinose transport system permease protein AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: efa:EF1348 1.4e-216 glucan 1,6-alpha-glucosidase; K01215 glucan 1,6-alpha-glucosidase; Psort location: Cytoplasmic, score: 9.97.	0.873
D920_02579	D920_02627	ABC transporter, permease protein; KEGG: bsr:I33_2930 2.1e-34 L-arabinose transport system permease protein AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	Intracellular maltogenic amylase; KEGG: efl:EF62_1799 6.8e-233 dexC; neopullulanase; Psort location: Cytoplasmic, score: 9.97.	0.913
D920_02579	D920_02628	ABC transporter, permease protein; KEGG: bsr:I33_2930 2.1e-34 L-arabinose transport system permease protein AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, solute-binding protein; KEGG: snc:HMPREF0837_10106 1.1e-33 maltose/maltodextrin ABC transporter ATP-binding protein K10108.	0.990
D920_02579	D920_02630	ABC transporter, permease protein; KEGG: bsr:I33_2930 2.1e-34 L-arabinose transport system permease protein AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: llk:LLKF_1844 3.9e-72 malG; maltose ABC transporter permease K10110; Psort location: CytoplasmicMembrane, score: 10.00.	0.997
D920_02579	D920_03029	ABC transporter, permease protein; KEGG: bsr:I33_2930 2.1e-34 L-arabinose transport system permease protein AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_12250 1.9e-180 msmK; maltose ABC superfamily ATP binding cassette transporter, ABC protein K10112; Psort location: CytoplasmicMembrane, score: 9.96.	0.997