Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02654EF_0831/AHA_3912 family protein; Psort location: Cytoplasmic, score: 7.50. (119 aa)    
Predicted Functional Partners:
D920_02652
EF_0833/AHA_3914 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.999
D920_02653
EF_0832/AHA_3913 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.999
D920_02655
EF_0830/AHA_3911 family protein; KEGG: vfi:VF_2503 8.1e-40 transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
 
    0.999
D920_02656
PRD domain protein, EF_0829/AHA_3910 family; KEGG: epr:EPYR_00556 4.5e-07 Glycine dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
 
    0.999
D920_00452
KEGG: efa:EF0838 9.1e-151 pyridoxal phosphate-dependent enzyme; K01042 L-seryl-tRNA(Ser) seleniumtransferase; Psort location: Cytoplasmic, score: 9.97.
 
    0.991
D920_00451
Amidohydrolase, EF_0837/AHA_3915 family; KEGG: ehr:EHR_01550 5.3e-139 dihydroorotase; Psort location: Cytoplasmic, score: 7.50.
 
     0.990
D920_00453
EF_0839/AHA_3917 family protein; KEGG: efi:OG1RF_12257 2.5e-107 4-hydroxy-2-oxoglutarate aldolase.
 
     0.990
D920_02657
PRD domain protein; KEGG: ttm:Tthe_1684 2.6e-50 transcriptional antiterminator BglG; Psort location: Cytoplasmic, score: 9.97.
 
     0.990
D920_00448
Putative PTS system, cellobiose-specific IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
       0.969
D920_00159
PRD domain protein; KEGG: cbj:H04402_02159 1.4e-27 putative transcriptional antiterminator, BglG family / PTS system, mannitol/fructose-specific IIA component; Psort location: Cytoplasmic, score: 7.50.
 
     0.968
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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