Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02708Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. (175 aa)    
Predicted Functional Partners:
dinG
DnaQ family exonuclease/DinG family helicase; 3'-5' exonuclease.
 
    0.998
D920_02709
Aspartate transaminase; KEGG: efu:HMPREF0351_11895 1.0e-174 aspB; aspartate transaminase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.998
asnS
asparagine--tRNA ligase; KEGG: efc:EFAU004_01925 4.9e-223 asnS; asparaginyl-tRNA synthetase K01893; Psort location: Cytoplasmic, score: 10.00.
       0.996
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.990
D920_02705
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.985
D920_02443
DnaD domain protein; KEGG: ssr:SALIVB_1214 1.6e-11 tpiA; triosephosphate isomerase K02086; Psort location: Cytoplasmic, score: 7.50.
 
     0.978
rexB
Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 2 subfamily.
 
     0.976
addA
ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
 
     0.973
D920_00878
Phosphomevalonate kinase; KEGG: efc:EFAU004_00258 7.6e-163 phosphomevalonate kinase K00938; Psort location: Cytoplasmic, score: 7.50.
 
     0.972
cca
Putative tRNA adenylyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
 
     0.972
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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