Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02713Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (122 aa)    
Predicted Functional Partners:
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
       0.999
D920_01804
Hydrolase, alpha/beta domain protein; KEGG: cbj:H04402_00528 9.0e-57 lysophospholipase; Psort location: CytoplasmicMembrane, score: 8.16.
       0.986
D920_02390
Hypothetical protein; KEGG: tsc:TSC_c18630 2.1e-16 ydiI; esterase YdiI.
       0.984
D920_00761
YbaK/EbsC protein; KEGG: bya:BANAU_2580 6.0e-28 yjdI; prolyl-tRNA synthetase K03976; Psort location: Cytoplasmic, score: 7.50; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.967
D920_01534
Putative proton-coupled thiamine transporter YuaJ; Psort location: CytoplasmicMembrane, score: 10.00.
       0.967
D920_02791
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.967
D920_02400
Carbonate dehydratase, eukaryotic-type; KEGG: efc:EFAU004_00960 5.1e-86 carbonic anhydrase K01674; Psort location: Cytoplasmic, score: 7.50.
       0.962
D920_00344
Hypothetical protein; KEGG: efi:OG1RF_12529 5.5e-73 brp/Blh family beta-carotene 15,15'-monooxygenase; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.916
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
  
    0.908
D920_01584
Hypothetical protein.
       0.904
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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