Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02729Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (159 aa)    
Predicted Functional Partners:
D920_02732
KEGG: sab:SAB1245c 3.6e-21 phosphate-binding lipoprotein K02040; Psort location: CytoplasmicMembrane, score: 9.68.
       0.829
D920_00685
KEGG: sab:SAB1245c 7.7e-12 phosphate-binding lipoprotein K02040; Psort location: CytoplasmicMembrane, score: 9.68.
       0.519
D920_02728
Hypothetical protein; Psort location: Extracellular, score: 8.91.
       0.515
D920_02727
Prevent-host-death family protein; KEGG: tgr:Tgr7_1341 0.0038 CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA; Psort location: Cytoplasmic, score: 7.50.
       0.428
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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