Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02744Hypothetical protein. (268 aa)    
Predicted Functional Partners:
D920_02743
KH domain protein; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0109 family.
       0.995
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.995
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.995
rpsP
Ribosomal protein S16; KEGG: apb:SAR116_1817 3.4e-18 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bS16 family.
       0.994
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.987
D920_02741
Flavin reductase; KEGG: efu:HMPREF0351_11837 5.0e-79 flavin reductase.
 
     0.922
D920_02353
KEGG: llk:LLKF_2194 3.0e-10 yuiD; GNAT family acetyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
     0.783
D920_01538
ABC 3 transport family protein; KEGG: pfe:PSF113_0030 9.4e-30 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00.
       0.646
D920_03113
Putative manganese transport system ATP-binding protein MntA; KEGG: efu:HMPREF0351_10498 1.2e-79 ABC superfamily ATP binding cassette transporter, ABC protein; Psort location: CytoplasmicMembrane, score: 9.96.
       0.643
D920_01682
Pyridine nucleotide-disulfide oxidoreductase; KEGG: efu:HMPREF0351_12678 0. NADH dehydrogenase K03885; Psort location: CytoplasmicMembrane, score: 9.51.
       0.640
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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