Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
D920_02750DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50. (287 aa)    
Predicted Functional Partners:
cinA
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.5e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.
     
 0.900
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.898
D920_01496
TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.850
D920_01143
Putative toxin-antitoxin system, toxin component; KEGG: bme:BMEI1683 0.0018 zinc-dependent metallopeptidase K01417; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.843
D920_02075
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.842
lysS
lysine--tRNA ligase; KEGG: efc:EFAU004_02596 1.4e-248 lysS; lysyl-tRNA synthetase K04567; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
  
 0.805
D920_02641
RIP metalloprotease RseP; KEGG: efc:EFAU004_01722 1.5e-182 eep; membrane-associated zinc metalloprotease K11749; Psort location: CytoplasmicMembrane, score: 9.99.
     
 0.798
D920_00536
Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
  
  
 0.780
D920_01915
Modification methylase HhaI family protein; KEGG: ssk:SSUD12_0445 3.9e-134 cytosine-specific methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase.
 
   
 0.778
D920_02113
AMP-binding enzyme; KEGG: efu:HMPREF0351_11403 2.5e-203 acetate--CoA ligase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.777
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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