Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02756Hypothetical protein; KEGG: efi:OG1RF_12452 2.6e-27 ubiD; UbiD family decarboxylase. (241 aa)    
Predicted Functional Partners:
D920_02755
Hypothetical protein.
 
     0.973
D920_00243
Hypothetical protein.
 
     0.911
D920_00838
Hypothetical protein; KEGG: efi:OG1RF_12454 7.2e-12 ubiD2; UbiD family decarboxylase.
 
     0.911
D920_02322
Hypothetical protein.
 
     0.910
D920_02843
Hypothetical protein.
 
     0.909
D920_00248
Hypothetical protein.
 
     0.908
D920_02340
Hypothetical protein.
 
     0.908
D920_00835
Hypothetical protein; KEGG: efi:OG1RF_12454 9.6e-07 ubiD2; UbiD family decarboxylase; Psort location: Extracellular, score: 9.13.
 
     0.902
D920_02001
Hypothetical protein.
 
     0.890
D920_00078
Hypothetical protein.
 
     0.889
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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