Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_02773Glyoxalase family protein; KEGG: efi:OG1RF_12360 1.8e-44 gloA7; lactoylglutathione lyase K07032; Psort location: Cytoplasmic, score: 7.50. (129 aa)    
Predicted Functional Partners:
D920_00473
KEGG: pfr:PFREUD_16470 5.3e-36 ubiG; 3-demethylubiquinone-9 3-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
     0.895
D920_02740
Riboflavin biosynthesis protein RibD protein; KEGG: efu:HMPREF0351_11838 5.8e-62 folA2; dihydrofolate reductase; Psort location: Cytoplasmic, score: 7.50.
 
     0.865
D920_02293
TIGR00730 family protein; KEGG: efu:HMPREF0351_10632 3.0e-81 cadA; lysine decarboxylase K06966; Psort location: Cytoplasmic, score: 7.50; Belongs to the LOG family.
     
 0.860
D920_00035
VanZ-like protein; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.845
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
       0.843
D920_01185
Hypothetical protein; KEGG: pfe:PSF113_4044 0.00018 glyoxalase bleomycin resistance protein dioxygenase K04750; Psort location: Cytoplasmic, score: 7.50.
       0.843
D920_02202
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.843
D920_00357
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
       0.840
D920_02739
KEGG: efu:HMPREF0351_11839 3.2e-68 tag; DNA-3-methyladenine glycosylase I K01246.
       0.840
D920_02650
Hypothetical protein.
 
     0.837
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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