Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_02783Hypothetical protein. (93 aa)    
Predicted Functional Partners:
D920_02780
KEGG: smp:SMAC_05546 0.0080 hypothetical protein; K03564 peroxiredoxin Q/BCP; Psort location: Cytoplasmic, score: 7.50.
       0.988
D920_02785
Hypothetical protein; KEGG: stz:SPYALAB49_000865 1.1e-42 phosphoenolpyruvate carboxylase; Psort location: Cytoplasmic, score: 7.50.
       0.980
D920_02784
Glyoxal reductase; KEGG: efc:EFAU004_01236 3.7e-138 oxidoreductase, aldo/keto reductase family protein; Psort location: Cytoplasmic, score: 9.97.
       0.908
D920_00801
Glyoxal reductase; KEGG: efi:OG1RF_10362 6.4e-111 morA; aldo/keto reductase family protein; Psort location: Cytoplasmic, score: 9.97.
       0.707
D920_02790
Hypothetical protein.
       0.541
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.538
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.520
D920_02668
KEGG: ate:Athe_0402 9.4e-30 LacI family transcriptional regulator K02529; Psort location: Cytoplasmic, score: 9.67.
       0.424
galT
UTP--hexose-1-phosphate uridylyltransferase; KEGG: efu:HMPREF0351_11701 3.8e-223 galT; UDP-glucose--hexose-1-phosphate uridylyltransferase K00965; Psort location: Cytoplasmic, score: 7.50.
       0.424
D920_02795
Hypothetical protein; KEGG: dme:Dmel_CG18255 4.4e-23 Strn-Mlck; Stretchin-Mlck K00907; Psort location: Extracellular, score: 9.72.
       0.407
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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